PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009801241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 677aa    MW: 78673.7 Da    PI: 6.8112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009801241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62e-2366150190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+Y+ke GF +r+s+s  +++ +e +++++ Cs  g+++++  +     ++r+etrtgC a+l++k+ ++++w++ ++el+HnH+++
  XP_009801241.1  66 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLADSKRWRIVEVELQHNHPVS 150
                     6*********************999******************9988.....9**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2166151IPR004330FAR1 DNA binding domain
PfamPF105511.7E-23271363IPR018289MULE transposase domain
PROSITE profilePS509669.31557593IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-6568595IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MMKNLKQMEA VCLNSDPVFD DCEEYEDEED CSVEEHDDGV HEKDSKKESP QPTIGLEFGS  60
FDEAYDFYNR YGKEQGFGIR VSNSWFRSKR KERYRAKLSC SSAGFKKKSG ANHPRPETRT  120
GCPAMLVIKL ADSKRWRIVE VELQHNHPVS PEVRRFYKSH KKMILADKKQ QESIPITEVH  180
TIKLYRTSID AACNGLQKIK DKDSRFPVDT SKHLELKEGD ANALYNYFCR MKLTNPNFFY  240
LLDLDDQGCL RNVFWADARS RAAFNYFSDA VAIDTTSLRN KYVLPLISFV GVNNHGQPVL  300
LGCGFLGHES VEYFIWMFKS WHTSMLGRHP QVIVTDQSKP LQIAVSKVFP QARHCYCLSY  360
IMQRVPEKLG GLDGYESIKM QLYKAVYDSL KITEFESSWG QMISQHGLKD NKWLQSLYED  420
REKWVPVYLK DISFMGIIPI TENESLNAYF DGYVHKHTSF KEFVDKYDLA MQRKHMKEAM  480
ADMESRSLSF ELKTNCNFEV KLSKIFTKEI FKKFQAEVEG IYSCFNTRQV NINGPIMTFV  540
VKERVESEGS EVEVKLFEVL YETTQAEIRC ICSLFNFKGY LCRHALNVLN YNGVEEIPSQ  600
YILPRWDKDY KRKFPVDSGL CHIDVNNPVE LYNILHKHVM QVVEEGVQSE EHYKAVLQEV  660
EALLSRFSLE DNNLVSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801241.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_009801242.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_016487876.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A061GQL80.0A0A061GQL8_THECC; FAR1-related sequence 6 isoform 1
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6